IL_7SYH_073

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYH_073 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.2541

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7SYH|1|2|G|1702
7SYH|1|2|C|1703
7SYH|1|2|C|1704
7SYH|1|2|C|1705
*
7SYH|1|2|G|1829
7SYH|1|2|U|1830
7SYH|1|2|A|1831
7SYH|1|2|A|1832
7SYH|1|2|C|1833

Current chains

Chain 2

18S rRNA

Nearby chains

Chain n

60s ribosomal protein l41