3D structure

PDB id
7SYI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.5 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
7SYI|1|2|U|172
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SYI_012 not in the Motif Atlas
Geometric match to IL_4V88_394
Geometric discrepancy: 0.1797
The information below is about IL_4V88_394
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.3
Basepair signature
cWW-cWW-tWH-tWH-tHW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

7SYI|1|2|G|145
7SYI|1|2|G|146
7SYI|1|2|A|147
7SYI|1|2|U|148
7SYI|1|2|A|149
7SYI|1|2|A|150
7SYI|1|2|C|151
*
7SYI|1|2|G|167
7SYI|1|2|C|168
7SYI|1|2|U|169
7SYI|1|2|A|170
7SYI|1|2|A|171
7SYI|1|2|U|172
7SYI|1|2|A|173
7SYI|1|2|C|174

Current chains

Chain 2
18S rRNA

Nearby chains

Chain H
eS6
Chain Z
40S ribosomal protein S24

Coloring options:


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