IL_7SYI_022

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

7SYI|1|2|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYI_022 not in the Motif Atlas

Geometric match to IL_4V88_404

Geometric discrepancy: 0.1414

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7SYI|1|2|G|411
7SYI|1|2|G|412
7SYI|1|2|G|413
*
7SYI|1|2|C|424
7SYI|1|2|G|425
7SYI|1|2|A|426
7SYI|1|2|U|427
7SYI|1|2|U|428
7SYI|1|2|C|429

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain K

uS4

Chain Y

uS12