IL_7SYI_034

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7SYI|1|2|A|668, 7SYI|1|2|A|669, 7SYI|1|2|A|670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYI_034 not in the Motif Atlas

Geometric match to IL_6CZR_134

Geometric discrepancy: 0.1838

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

7SYI|1|2|G|665
7SYI|1|2|U|666
7SYI|1|2|U|667
7SYI|1|2|A|668
7SYI|1|2|A|669
7SYI|1|2|A|670
7SYI|1|2|A|671
*
7SYI|1|2|U|1161
7SYI|1|2|C|1162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain b

eS26 (S26)