IL_7SYI_039

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYI_039 not in the Motif Atlas

Geometric match to IL_4PDB_002

Geometric discrepancy: 0.2019

The information below is about IL_4PDB_002

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

7SYI|1|2|A|802
7SYI|1|2|C|803
*
7SYI|1|2|G|860
7SYI|1|2|A|861
7SYI|1|2|A|862
7SYI|1|2|U|863

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S7

Chain M

uS17

Chain X

uS8