IL_7SYI_050

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGCUAG*CUUGGACCG

Length

15 nucleotides

Bulged bases

7SYI|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYI_050 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.3436

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

7SYI|1|2|C|951
7SYI|1|2|G|952
7SYI|1|2|C|953
7SYI|1|2|U|954
7SYI|1|2|A|955
7SYI|1|2|G|956
*
7SYI|1|2|C|967
7SYI|1|2|U|968
7SYI|1|2|U|969
7SYI|1|2|G|970
7SYI|1|2|G|971
7SYI|1|2|A|972
7SYI|1|2|C|973
7SYI|1|2|C|974
7SYI|1|2|G|975

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain P

uS11