IL_7SYI_059

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYI_059 not in the Motif Atlas

Geometric match to IL_7A0S_028

Geometric discrepancy: 0.3055

The information below is about IL_7A0S_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

7SYI|1|2|G|1235
7SYI|1|2|G|1236
*
7SYI|1|2|C|1521
7SYI|1|2|A|1522
7SYI|1|2|C|1523

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain T

uS13