IL_7SYI_092

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYI_092 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.2612

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7SYI|1|2|C|927
7SYI|1|2|G|928
7SYI|1|2|G|929
7SYI|1|2|C|930
7SYI|1|2|C|931
*
7SYI|1|2|G|1010
7SYI|1|2|A|1011
7SYI|1|2|A|1012
7SYI|1|2|U|1013
7SYI|1|2|G|1014

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain c

eS27