IL_7SYI_106

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7SYI|1|2|G|970

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYI_106 not in the Motif Atlas

Geometric match to IL_6UFM_001

Geometric discrepancy: 0.3484

The information below is about IL_6UFM_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

7SYI|1|2|G|952
7SYI|1|2|C|953
7SYI|1|2|U|954
7SYI|1|2|A|955
7SYI|1|2|G|956
*
7SYI|1|2|C|967
7SYI|1|2|U|968
7SYI|1|2|U|969
7SYI|1|2|G|970
7SYI|1|2|G|971
7SYI|1|2|A|972
7SYI|1|2|C|973
7SYI|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain P

uS11