IL_7SYJ_006
3D structure
- PDB id
- 7SYJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 7SYJ|1|2|C|65, 7SYJ|1|2|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYJ_006 not in the Motif Atlas
- Geometric match to IL_4V88_390
- Geometric discrepancy: 0.2869
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7SYJ|1|2|U|63
7SYJ|1|2|A|64
7SYJ|1|2|C|65
7SYJ|1|2|G|66
7SYJ|1|2|C|67
7SYJ|1|2|A|68
*
7SYJ|1|2|U|81
7SYJ|1|2|G|82
7SYJ|1|2|A|83
7SYJ|1|2|A|84
7SYJ|1|2|A|85
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain H
- eS6
- Chain Z
- 40S ribosomal protein S24
Coloring options: