IL_7SYJ_041

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CCGC*GAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYJ_041 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.3049

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7SYJ|1|2|C|876
7SYJ|1|2|C|877
7SYJ|1|2|G|878
7SYJ|1|2|C|879
*
7SYJ|1|2|G|907
7SYJ|1|2|A|908
7SYJ|1|2|G|909
7SYJ|1|2|G|910

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S7