IL_7SYJ_048

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGCUAG*CUUGGACCG

Length

15 nucleotides

Bulged bases

7SYJ|1|2|G|970

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYJ_048 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.3956

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

7SYJ|1|2|C|951
7SYJ|1|2|G|952
7SYJ|1|2|C|953
7SYJ|1|2|U|954
7SYJ|1|2|A|955
7SYJ|1|2|G|956
*
7SYJ|1|2|C|967
7SYJ|1|2|U|968
7SYJ|1|2|U|969
7SYJ|1|2|G|970
7SYJ|1|2|G|971
7SYJ|1|2|A|972
7SYJ|1|2|C|973
7SYJ|1|2|C|974
7SYJ|1|2|G|975

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain P

uS11