IL_7SYJ_050

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYJ_050 not in the Motif Atlas

Geometric match to IL_6CZR_145

Geometric discrepancy: 0.1789

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7SYJ|1|2|C|1047
7SYJ|1|2|G|1048
7SYJ|1|2|A|1049
7SYJ|1|2|A|1050
7SYJ|1|2|G|1051
*
7SYJ|1|2|C|1067
7SYJ|1|2|G|1068
7SYJ|1|2|U|1069
7SYJ|1|2|A|1070
7SYJ|1|2|G|1071

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

eS26 (S26)

Chain n

60s ribosomal protein l41