IL_7SYJ_054

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYJ_054 not in the Motif Atlas

Geometric match to IL_4LFB_034

Geometric discrepancy: 0.1301

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7SYJ|1|2|G|1168
7SYJ|1|2|G|1169
7SYJ|1|2|A|1170
7SYJ|1|2|G|1171
7SYJ|1|2|U|1172
7SYJ|1|2|A|1173
7SYJ|1|2|U|1174
7SYJ|1|2|G|1175
*
7SYJ|1|2|U|1186
7SYJ|1|2|G|1187
7SYJ|1|2|A|1188
7SYJ|1|2|A|1189
7SYJ|1|2|A|1190
7SYJ|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

60s ribosomal protein l41