IL_7SYJ_066

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

7SYJ|1|2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYJ_066 not in the Motif Atlas

Homologous match to IL_8C3A_461

Geometric discrepancy: 0.5552

The information below is about IL_8C3A_461

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13404.1

Basepair signature

cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

7SYJ|1|2|C|1395
7SYJ|1|2|A|1396
7SYJ|1|2|U|1397
7SYJ|1|2|G|1398
7SYJ|1|2|C|1399
*
7SYJ|1|2|G|1447
7SYJ|1|2|A|1448
7SYJ|1|2|G|1449
7SYJ|1|2|G|1450

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain h

RACK1