IL_7SYJ_077

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UUGG*CUA

Length

7 nucleotides

Bulged bases

7SYJ|1|2|U|1721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYJ_077 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.3361

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7SYJ|1|2|U|1720
7SYJ|1|2|U|1721
7SYJ|1|2|G|1722
7SYJ|1|2|G|1723
*
7SYJ|1|2|C|1811
7SYJ|1|2|U|1812
7SYJ|1|2|A|1813

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12