IL_7SYK_031

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7SYK|1|2|A|628, 7SYK|1|2|U|630, 7SYK|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYK_031 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2418

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7SYK|1|2|G|611
7SYK|1|2|U|612
7SYK|1|2|G|613
7SYK|1|2|C|614
7SYK|1|2|C|615
7SYK|1|2|A|616
7SYK|1|2|G|617
*
7SYK|1|2|C|624
7SYK|1|2|G|625
7SYK|1|2|G|626
7SYK|1|2|U|627
7SYK|1|2|A|628
7SYK|1|2|A|629
7SYK|1|2|U|630
7SYK|1|2|U|631
7SYK|1|2|C|632

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain Y

uS12

Chain f

eS30