IL_7SYK_098

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

7SYK|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYK_098 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.3999

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7SYK|1|2|G|924
7SYK|1|2|G|925
7SYK|1|2|A|926
*
7SYK|1|2|U|1015
7SYK|1|2|U|1016
7SYK|1|2|U|1017
7SYK|1|2|U|1018

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

uS15

Chain c

eS27