IL_7SYL_031

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7SYL|1|2|A|628, 7SYL|1|2|U|630, 7SYL|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYL_031 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2307

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7SYL|1|2|G|611
7SYL|1|2|U|612
7SYL|1|2|G|613
7SYL|1|2|C|614
7SYL|1|2|C|615
7SYL|1|2|A|616
7SYL|1|2|G|617
*
7SYL|1|2|C|624
7SYL|1|2|G|625
7SYL|1|2|G|626
7SYL|1|2|U|627
7SYL|1|2|A|628
7SYL|1|2|A|629
7SYL|1|2|U|630
7SYL|1|2|U|631
7SYL|1|2|C|632

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain Y

uS12

Chain f

eS30