IL_7SYL_047

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYL_047 not in the Motif Atlas

Geometric match to IL_4V88_432

Geometric discrepancy: 0.1695

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7SYL|1|2|G|942
7SYL|1|2|U|943
7SYL|1|2|A|944
7SYL|1|2|U|945
*
7SYL|1|2|A|981
7SYL|1|2|G|982
7SYL|1|2|A|983
7SYL|1|2|C|984

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain P

uS11

Chain b

eS26 (S26)