IL_7SYL_050

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYL_050 not in the Motif Atlas

Geometric match to IL_4V88_436

Geometric discrepancy: 0.1576

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7SYL|1|2|C|1047
7SYL|1|2|G|1048
7SYL|1|2|A|1049
7SYL|1|2|A|1050
7SYL|1|2|G|1051
*
7SYL|1|2|C|1067
7SYL|1|2|G|1068
7SYL|1|2|U|1069
7SYL|1|2|A|1070
7SYL|1|2|G|1071

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

eS26 (S26)