IL_7SYM_031

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7SYM|1|2|A|628, 7SYM|1|2|U|630, 7SYM|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYM_031 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1991

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7SYM|1|2|G|611
7SYM|1|2|U|612
7SYM|1|2|G|613
7SYM|1|2|C|614
7SYM|1|2|C|615
7SYM|1|2|A|616
7SYM|1|2|G|617
*
7SYM|1|2|C|624
7SYM|1|2|G|625
7SYM|1|2|G|626
7SYM|1|2|U|627
7SYM|1|2|A|628
7SYM|1|2|A|629
7SYM|1|2|U|630
7SYM|1|2|U|631
7SYM|1|2|C|632

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain Y

uS12

Chain f

eS30