IL_7SYN_032

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_032 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.1992

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7SYN|1|2|U|566
7SYN|1|2|C|567
7SYN|1|2|C|568
7SYN|1|2|A|569
*
7SYN|1|2|U|581
7SYN|1|2|U|582
7SYN|1|2|A|583
7SYN|1|2|A|584

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

eS24