IL_7SYN_034

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7SYN|1|2|A|628, 7SYN|1|2|U|630, 7SYN|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_034 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1878

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7SYN|1|2|G|611
7SYN|1|2|U|612
7SYN|1|2|G|613
7SYN|1|2|C|614
7SYN|1|2|C|615
7SYN|1|2|A|616
7SYN|1|2|G|617
*
7SYN|1|2|C|624
7SYN|1|2|G|625
7SYN|1|2|G|626
7SYN|1|2|U|627
7SYN|1|2|A|628
7SYN|1|2|A|629
7SYN|1|2|U|630
7SYN|1|2|U|631
7SYN|1|2|C|632

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain Y

uS12

Chain f

eS30