IL_7SYN_050

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

7SYN|1|2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_050 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1549

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7SYN|1|2|C|931
7SYN|1|2|G|932
7SYN|1|2|G|933
7SYN|1|2|G|934
7SYN|1|2|G|935
*
7SYN|1|2|C|1007
7SYN|1|2|A|1008
7SYN|1|2|A|1009
7SYN|1|2|G|1010

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain b

eS26