IL_7SYN_085

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUUA*UUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYN_085 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.361

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7SYN|1|2|G|1727
7SYN|1|2|U|1728
7SYN|1|2|U|1729
7SYN|1|2|U|1730
7SYN|1|2|A|1731
*
7SYN|1|2|U|1803
7SYN|1|2|U|1804
7SYN|1|2|G|1805
7SYN|1|2|A|1806
7SYN|1|2|C|1807

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8