IL_7SYN_106
3D structure
- PDB id
- 7SYN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7SYN|1|2|C|1331, 7SYN|1|2|U|1494, 7SYN|1|2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYN_106 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1903
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7SYN|1|2|U|1329
7SYN|1|2|G|1330
7SYN|1|2|C|1331
7SYN|1|2|A|1332
7SYN|1|2|U|1333
7SYN|1|2|G|1334
7SYN|1|2|G|1335
*
7SYN|1|2|U|1492
7SYN|1|2|C|1493
7SYN|1|2|U|1494
7SYN|1|2|G|1495
7SYN|1|2|U|1496
7SYN|1|2|G|1497
7SYN|1|2|A|1498
7SYN|1|2|U|1499
7SYN|1|2|G|1500
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- uS3
- Chain L
- eS10
- Chain V
- uS10
- Chain e
- uS14
Coloring options: