IL_7SYO_029

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7SYO|1|2|U|627, 7SYO|1|2|A|628, 7SYO|1|2|U|630, 7SYO|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYO_029 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2647

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7SYO|1|2|G|611
7SYO|1|2|U|612
7SYO|1|2|G|613
7SYO|1|2|C|614
7SYO|1|2|C|615
7SYO|1|2|A|616
7SYO|1|2|G|617
*
7SYO|1|2|C|624
7SYO|1|2|G|625
7SYO|1|2|G|626
7SYO|1|2|U|627
7SYO|1|2|A|628
7SYO|1|2|A|629
7SYO|1|2|U|630
7SYO|1|2|U|631
7SYO|1|2|C|632

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain Y

uS12

Chain f

eS30