IL_7SYP_034
3D structure
- PDB id
- 7SYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7SYP|1|2|A|628, 7SYP|1|2|U|630
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYP_034 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2238
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7SYP|1|2|G|611
7SYP|1|2|U|612
7SYP|1|2|G|613
7SYP|1|2|C|614
7SYP|1|2|C|615
7SYP|1|2|A|616
7SYP|1|2|G|617
*
7SYP|1|2|C|624
7SYP|1|2|G|625
7SYP|1|2|G|626
7SYP|1|2|U|627
7SYP|1|2|A|628
7SYP|1|2|A|629
7SYP|1|2|U|630
7SYP|1|2|U|631
7SYP|1|2|C|632
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 7
- HCV IRES partially loaded mRNA portion
- Chain E
- uS3
- Chain Y
- uS12
- Chain f
- eS30
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