IL_7SYP_060

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

7SYP|1|2|C|1215, 7SYP|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYP_060 not in the Motif Atlas

Geometric match to IL_4V88_443

Geometric discrepancy: 0.1631

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

7SYP|1|2|A|1214
7SYP|1|2|C|1215
7SYP|1|2|C|1216
7SYP|1|2|A|1217
*
7SYP|1|2|U|1681
7SYP|1|2|C|1682
7SYP|1|2|C|1683
7SYP|1|2|C|1684
7SYP|1|2|U|1685

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain R

uS9

Chain d

eS28