IL_7SYP_068
3D structure
- PDB id
- 7SYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 7SYP|1|2|U|1494, 7SYP|1|2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYP_068 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1867
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7SYP|1|2|U|1333
7SYP|1|2|G|1334
7SYP|1|2|G|1335
*
7SYP|1|2|U|1492
7SYP|1|2|C|1493
7SYP|1|2|U|1494
7SYP|1|2|G|1495
7SYP|1|2|U|1496
7SYP|1|2|G|1497
7SYP|1|2|A|1498
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- uS3
- Chain L
- eS10
- Chain V
- uS10
- Chain e
- uS14
Coloring options: