IL_7SYP_076
3D structure
- PDB id
- 7SYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 7SYP|1|2|C|1553, 7SYP|1|2|A|1580, 7SYP|1|2|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYP_076 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.276
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7SYP|1|2|G|1550
7SYP|1|2|U|1551
7SYP|1|2|G|1552
7SYP|1|2|C|1553
7SYP|1|2|C|1554
7SYP|1|2|U|1555
7SYP|1|2|A|1556
7SYP|1|2|C|1557
7SYP|1|2|C|1558
*
7SYP|1|2|G|1577
7SYP|1|2|U|1578
7SYP|1|2|A|1579
7SYP|1|2|A|1580
7SYP|1|2|C|1581
7SYP|1|2|C|1582
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- uS3
- Chain L
- eS10
- Chain V
- uS10
- Chain e
- uS14
Coloring options: