3D structure

PDB id
7SYQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGAAG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SYQ_053 not in the Motif Atlas
Geometric match to IL_4V88_436
Geometric discrepancy: 0.1534
The information below is about IL_4V88_436
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.4
Basepair signature
cWW-R-L-tHS-tHW-cWW
Number of instances in this motif group
18

Unit IDs

7SYQ|1|2|C|1047
7SYQ|1|2|G|1048
7SYQ|1|2|A|1049
7SYQ|1|2|A|1050
7SYQ|1|2|G|1051
*
7SYQ|1|2|C|1067
7SYQ|1|2|G|1068
7SYQ|1|2|U|1069
7SYQ|1|2|A|1070
7SYQ|1|2|G|1071

Current chains

Chain 2
18S rRNA

Nearby chains

Chain P
uS11
Chain b
eS26

Coloring options:


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