IL_7SYQ_053
3D structure
- PDB id
- 7SYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYQ_053 not in the Motif Atlas
- Geometric match to IL_4V88_436
- Geometric discrepancy: 0.1534
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7SYQ|1|2|C|1047
7SYQ|1|2|G|1048
7SYQ|1|2|A|1049
7SYQ|1|2|A|1050
7SYQ|1|2|G|1051
*
7SYQ|1|2|C|1067
7SYQ|1|2|G|1068
7SYQ|1|2|U|1069
7SYQ|1|2|A|1070
7SYQ|1|2|G|1071
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain P
- uS11
- Chain b
- eS26
Coloring options: