IL_7SYR_060

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCGA*UUGU

Length

9 nucleotides

Bulged bases

7SYR|1|2|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYR_060 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2059

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7SYR|1|2|G|1204
7SYR|1|2|G|1205
7SYR|1|2|C|1206
7SYR|1|2|G|1207
7SYR|1|2|A|1208
*
7SYR|1|2|U|1691
7SYR|1|2|U|1692
7SYR|1|2|G|1693
7SYR|1|2|U|1694

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5

Chain b

eS26

Chain z

Internal ribosome entry site; IRES