IL_7SYR_112

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UACC*GGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYR_112 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.2326

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7SYR|1|2|U|1714
7SYR|1|2|A|1715
7SYR|1|2|C|1716
7SYR|1|2|C|1717
*
7SYR|1|2|G|1816
7SYR|1|2|G|1817
7SYR|1|2|A|1818
7SYR|1|2|A|1819

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

eL41