IL_7SYS_033
3D structure
- PDB id
- 7SYS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7SYS|1|2|A|628
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYS_033 not in the Motif Atlas
- Homologous match to IL_8C3A_425
- Geometric discrepancy: 0.2387
- The information below is about IL_8C3A_425
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7SYS|1|2|G|611
7SYS|1|2|U|612
7SYS|1|2|G|613
7SYS|1|2|C|614
7SYS|1|2|C|615
7SYS|1|2|A|616
7SYS|1|2|G|617
*
7SYS|1|2|C|624
7SYS|1|2|G|625
7SYS|1|2|G|626
7SYS|1|2|U|627
7SYS|1|2|A|628
7SYS|1|2|A|629
7SYS|1|2|U|630
7SYS|1|2|U|631
7SYS|1|2|C|632
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain E
- uS3
- Chain Y
- uS12
- Chain f
- eS30
- Chain z
- Internal ribosome entry site; IRES
Coloring options: