IL_7SYT_059
3D structure
- PDB id
- 7SYT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 7SYT|1|2|C|1215, 7SYT|1|2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYT_059 not in the Motif Atlas
- Geometric match to IL_4V88_443
- Geometric discrepancy: 0.1337
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
7SYT|1|2|A|1214
7SYT|1|2|C|1215
7SYT|1|2|C|1216
7SYT|1|2|A|1217
*
7SYT|1|2|U|1681
7SYT|1|2|C|1682
7SYT|1|2|C|1683
7SYT|1|2|C|1684
7SYT|1|2|U|1685
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain G
- uS7
- Chain R
- uS9
- Chain d
- eS28
- Chain i
- Transfer RNA; tRNA
- Chain z
- Internal ribosome entry site; IRES
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