IL_7SYU_075
3D structure
- PDB id
- 7SYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 7SYU|1|2|A|1556, 7SYU|1|2|A|1580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYU_075 not in the Motif Atlas
- Geometric match to IL_6CZR_161
- Geometric discrepancy: 0.386
- The information below is about IL_6CZR_161
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.1
- Basepair signature
- cWW-cSS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
7SYU|1|2|G|1550
7SYU|1|2|U|1551
7SYU|1|2|G|1552
7SYU|1|2|C|1553
7SYU|1|2|C|1554
7SYU|1|2|U|1555
7SYU|1|2|A|1556
7SYU|1|2|C|1557
7SYU|1|2|C|1558
*
7SYU|1|2|G|1577
7SYU|1|2|U|1578
7SYU|1|2|A|1579
7SYU|1|2|A|1580
7SYU|1|2|C|1581
7SYU|1|2|C|1582
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- uS3
- Chain L
- eS10
- Chain V
- uS10
- Chain e
- eS29
Coloring options: