IL_7SYV_013

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7SYV|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYV_013 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1523

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7SYV|1|2|G|145
7SYV|1|2|G|146
7SYV|1|2|A|147
7SYV|1|2|U|148
7SYV|1|2|A|149
7SYV|1|2|A|150
7SYV|1|2|C|151
*
7SYV|1|2|G|167
7SYV|1|2|C|168
7SYV|1|2|U|169
7SYV|1|2|A|170
7SYV|1|2|A|171
7SYV|1|2|U|172
7SYV|1|2|A|173
7SYV|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

40S ribosomal protein S24