IL_7SYV_068
3D structure
- PDB id
- 7SYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 7SYV|1|2|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYV_068 not in the Motif Atlas
- Geometric match to IL_1CSL_001
- Geometric discrepancy: 0.3734
- The information below is about IL_1CSL_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59580.1
- Basepair signature
- cWW-cHW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7SYV|1|2|C|1395
7SYV|1|2|A|1396
7SYV|1|2|U|1397
7SYV|1|2|G|1398
7SYV|1|2|C|1399
*
7SYV|1|2|G|1447
7SYV|1|2|A|1448
7SYV|1|2|G|1449
7SYV|1|2|G|1450
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain R
- uS9
- Chain S
- eS17
- Chain V
- uS10
- Chain h
- RACK1
Coloring options: