IL_7SYV_075

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYV_075 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1645

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7SYV|1|2|G|1702
7SYV|1|2|C|1703
7SYV|1|2|C|1704
7SYV|1|2|C|1705
*
7SYV|1|2|G|1829
7SYV|1|2|U|1830
7SYV|1|2|A|1831
7SYV|1|2|A|1832
7SYV|1|2|C|1833

Current chains

Chain 2

18S rRNA

Nearby chains

Chain i

Transfer RNA; tRNA

Chain n

60s ribosomal protein l41

Chain z

Internal ribosome entry site; IRES