IL_7SYV_077
3D structure
- PDB id
- 7SYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 7SYV|1|2|A|1824, 7SYV|1|2|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYV_077 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.4577
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73099.1
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
7SYV|1|2|C|1708
7SYV|1|2|G|1709
7SYV|1|2|C|1710
7SYV|1|2|U|1711
*
7SYV|1|2|A|1822
7SYV|1|2|A|1823
7SYV|1|2|A|1824
7SYV|1|2|A|1825
7SYV|1|2|G|1826
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain Y
- uS12
- Chain n
- 60s ribosomal protein l41
- Chain z
- Internal ribosome entry site; IRES
Coloring options: