IL_7SYV_100

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCUAG*CUUGGACCG

Length

15 nucleotides

Bulged bases

7SYV|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYV_100 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.2543

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

7SYV|1|2|C|951
7SYV|1|2|G|952
7SYV|1|2|C|953
7SYV|1|2|U|954
7SYV|1|2|A|955
7SYV|1|2|G|956
*
7SYV|1|2|C|967
7SYV|1|2|U|968
7SYV|1|2|U|969
7SYV|1|2|G|970
7SYV|1|2|G|971
7SYV|1|2|A|972
7SYV|1|2|C|973
7SYV|1|2|C|974
7SYV|1|2|G|975

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain P

uS11