IL_7SYV_105

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUACG*CGCGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYV_105 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3963

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7SYV|1|2|C|1559
7SYV|1|2|U|1560
7SYV|1|2|A|1561
7SYV|1|2|C|1562
7SYV|1|2|G|1563
*
7SYV|1|2|C|1572
7SYV|1|2|G|1573
7SYV|1|2|C|1574
7SYV|1|2|G|1575
7SYV|1|2|G|1576

Current chains

Chain 2

18S rRNA

Nearby chains

Chain U

eS19