IL_7SYV_112

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYV_112 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.2453

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

7SYV|1|2|G|1270
7SYV|1|2|C|1271
7SYV|1|2|C|1272
7SYV|1|2|C|1273
*
7SYV|1|2|G|1510
7SYV|1|2|U|1511
7SYV|1|2|C|1512

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain e

eS29

Chain g

40S ribosomal protein S27a