IL_7SYV_113

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACAGGA*UU

Length

8 nucleotides

Bulged bases

7SYV|1|2|A|1284, 7SYV|1|2|G|1285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYV_113 not in the Motif Atlas

Geometric match to IL_8CRE_007

Geometric discrepancy: 0.3774

The information below is about IL_8CRE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92634.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

7SYV|1|2|A|1282
7SYV|1|2|C|1283
7SYV|1|2|A|1284
7SYV|1|2|G|1285
7SYV|1|2|G|1286
7SYV|1|2|A|1287
*
7SYV|1|2|U|1314
7SYV|1|2|U|1315

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain g

40S ribosomal protein S27a