IL_7SYX_060

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYX_060 not in the Motif Atlas

Geometric match to IL_4LFB_034

Geometric discrepancy: 0.1013

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7SYX|1|2|G|1168
7SYX|1|2|G|1169
7SYX|1|2|A|1170
7SYX|1|2|G|1171
7SYX|1|2|U|1172
7SYX|1|2|A|1173
7SYX|1|2|U|1174
7SYX|1|2|G|1175
*
7SYX|1|2|U|1186
7SYX|1|2|G|1187
7SYX|1|2|A|1188
7SYX|1|2|A|1189
7SYX|1|2|A|1190
7SYX|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

60s ribosomal protein l41