IL_7TM3_034

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7TM3|1|K|G|748, 7TM3|1|K|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_034 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1846

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7TM3|1|K|G|745
7TM3|1|K|A|746
7TM3|1|K|A|747
7TM3|1|K|G|748
7TM3|1|K|G|749
7TM3|1|K|U|750
7TM3|1|K|G|751
7TM3|1|K|G|752
*
7TM3|1|K|U|911
7TM3|1|K|G|912
7TM3|1|K|U|913
7TM3|1|K|U|914
7TM3|1|K|A|915
7TM3|1|K|C|916
7TM3|1|K|A|917
7TM3|1|K|G|918
7TM3|1|K|C|919

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14

Chain S

eL20