IL_7TM3_079

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_079 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0824

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7TM3|1|K|G|2358
7TM3|1|K|U|2359
7TM3|1|K|A|2360
7TM3|1|K|G|2361
7TM3|1|K|U|2362
7TM3|1|K|A|2363
7TM3|1|K|G|2364
*
7TM3|1|K|C|3858
7TM3|1|K|G|3859
7TM3|1|K|A|3860
7TM3|1|K|A|3861
7TM3|1|K|A|3862
7TM3|1|K|C|3863

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain P

uL22