IL_7TM3_085

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_085 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.2627

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7TM3|1|K|C|2589
7TM3|1|K|G|2590
7TM3|1|K|A|2591
7TM3|1|K|U|2592
7TM3|1|K|C|2593
*
7TM3|1|K|G|2752
7TM3|1|K|G|2753
7TM3|1|K|G|2754
7TM3|1|K|A|2755
7TM3|1|K|G|2756

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain Z

60S ribosomal protein L27

Chain g

60S ribosomal protein L34